Microbiology: Degree Requirements

Microbiology student

Our interdisciplinary program capitalizes on existing strengths of University of Delaware faculty from many departments across five colleges:

As a student in the program, you may be advised by any of the faculty affiliated with the program. Upon completing the program, your degree will be granted by the college in which your adviser is housed.

The Microbiology Graduate Program offers two degree options:

  • A Ph.D. with dissertation (42 credits)

  • A Master of Science with thesis (30 credits)

Both degrees offer four areas of study:

  • Environmental Microbiology: This track includes geomicrobiology, microbial ecology of non-host environments, biogeochemistry and viral ecology.
  • Host-Microbe Interactions: This track includes host-associated microbiomes, microbial ecology of host-associated environments, pathogenesis, immunology and virology.
  • Applied Microbiology: This track includes bioremediation, fermentation, food and agricultural microbiology, industrial microbiology and synthetic biology.
  • Microbial Physiology and Genetics: This track includes systems biology, microbial biochemistry, metabolism and gene regulation.

 

To be accepted into our MS program, students must have a faculty member identified and agreed upon as a sponsor. 

We expect M.S. graduates to

  • Critically analyze the primary literature

  • Accurately carry out complex experimental designs based on the primary literature

  • Analyze quantitative and bioinformatic microbiology data

  • Compellingly present results of experiments in both oral and written formats

Course requirements summary:

MS students are required to take 8 credits from the core curriculum (7 course credits plus 1 seminar credit), 12 credits chosen from the electives relevant to their concentrations, 4 research credits and 6 thesis credits, for a total of 30 credits.

MS in Microbiology

No. of credits

Core courses

7

Seminar

1

Elective courses

12

Research credits

4

Thesis credits

6

Total credits

30

In addition to the skills of an M.S., we expect Ph.D. graduates to

  • Identify knowledge gaps in their track/concentration

  • Design and implement research programs that creatively address these knowledge gaps

  • Develop and demonstrate teaching skills (these include, but are not limited to, a TA-ship in a classroom or laboratory setting; designing and developing teaching aids like audiovisual packages for classroom use; designing and implementing one or more lab experiments for a course; guest lecturing)

PhD students are required to take 12 credits from the core curriculum (9 course credits plus 3 seminar credits), 15 credits chosen from the electives relevant to their concentrations, and 9 dissertation credits, for a total of 42 credits. PhD students will also be expected to do rotations through three labs within their first 6 months in the program, in order to (a) hone skills for their Ph.D. project and (b) get a more well-rounded perspective of microbiology research.

PhD in Microbiology

No. of credits

Core courses

9

Seminar

3

Elective courses

15

Research credits

6

Dissertation credits

9

Total credits

42

Core Courses

  • Microbial Physiology and Diversity (MAST625; 3 credits): Microbial growth and composition, cell architecture and structures, energy metabolism, diversity in energy and assimilatory metabolism.
  • Microbial Genetics and Genomics (MAST626; 3 credits): Central dogma, genetic techniques, gene regulation, genome structure and function, -omics, focus on archaea, bacteria and viruses.
  • Current Topics in Microbiology: Seminar (MCRO811, 1X for M.S. [1 credit], 3X for Ph.D. [3 credits]): Exposure to the breadth of research including microbiology from external and internal speakers; required presentation on the student’s research project will foster oral communication and professional development.
  • Microbiology Journal Club (BISC850, 1X for M.S. [1 credit], 3X for Ph.D. [3 credits]): Develop critical literature analysis skills and discussion practices; requirement to present a paper will foster oral communication skills.

Laboratory Rotation (Ph.D. only): Acquisition of laboratory skills and selection of advisor through three laboratory rotations.

Elective Courses:

A range of electives is available based on the teaching activities of Microbiology program faculty.  To be included as an elective in the Microbiology graduate program, a course must be 600-level or higher and be approved after a review of the syllabus by the Program Director and Faculty Steering Committee. An asterisk* indicates a course is not taught every year. Faculty regularly develop new courses and so students may inquire about substitutions and additions to this list.

Course Number

Course Title

Semester 

Professor

Environmental Microbiology

 

 

BINF640

Database for Bioinformatics

Spring

Huseyin Kuyuk

BINF644

Bioinformatics

Fall/Spring

Cecilia Arighi

BINF690

Programming for Bioinformatics

Fall/Spring

Ryan Moore, Jaysheel Bhavsar

BINF694

Systems Biology I

Spring

Shawn Polson, Cecilia Arighi

CIEG644

Microbiology of Engineered Systems

 *

faculty

GEOL645/MAST645

Geomicrobiology

Fall*

Clara Chan

MAST616

Methods in Molecular Biology

Spring*

Jen Biddle

MAST618

Microbial Ecology

Spring

Jen Biddle

MAST634

Marine Molecular Science 

Fall

Jen Biddle

PLSC619

Soil Microbiology 

Spring

Jeff Fuhrmann

Host-microbe Interactions

 

 

ANFS655

Gut Microbiome

Spring

Alexander Yitbarek

ANFS635 

Animal Virology 

Fall

Mark Parcells

ANFS671

Paradigms in Cell Signaling

Spring*

Mark Parcells

BINF640

Database for Bioinformatics

Spring

Huseyin Kuyuk

BINF644

Bioinformatics

Fall/Spring

Cecilia Arighi

BINF690

Programming for Bioinformatics

Fall/Spring

Ryan Moore, Jaysheel Bhavsar

BINF694

Systems Biology I

Spring

Shawn Polson, Cecilia Arighi

MAST616

Methods in Molecular Biology

Spring*

Jen Biddle

MAST634

Marine Molecular Science 

Fall

Jen Biddle

MMSC650

Medical Biochemistry

Spring

Subhasis (Sam) Biswas

MMSC690

Clinical & Molecular Cell Biology 

Fall

Sam Biswas

MMSC638

Diagnostic Medical Mycology and Bacteriology

Fall 

Kimberly Walker

PLSC619

Soil Microbiology 

Spring

Jeff Fuhrmann

PLSC611

Molecular Plant Pathology 

Fall

Nicole Donofrio

Applied Microbiology

 

 

ANFS649

Food Biotechnology 

Spring

Adrienne Shearer

ANFS636

Immunology of Domestic Animals

Spring/Fall

Mark Parcells/Alexander Bekele-Yitbarek

ANFS639

Food Microbiology 

Fall

Kali Kniel

BINF640

Database for Bioinformatics

Spring

Huseyin Kuyuk

BINF644

Bioinformatics

Fall/Spring

Cecilia Arighi

BINF690

Programming for Bioinformatics

Fall/Spring

Ryan Moore, Jaysheel Bhavsar

BINF694

Systems Biology I

Spring

Shawn Polson, Cecilia Arighi

CHEG420

Biochemical Engineering

Spring

Terry Papoutsakis

CHEG621

Metabolic Engineering

Spring

Aditya Kunjapur

CHEM641

Biochemistry

Fall

various faculty

CIEG644

Microbiology of Engineered Systems

*

faculty

MAST616

Methods in Molecular Biology

Spring*

Julie Maresca/Jen Biddle

MMSC638

Diagnostic Medical Mycology and Bacteriology

Fall 

Kimberly Walker

PLSC611

Molecular Plant Pathology

Fall

Nicole Donofrio

Microbial Physiology and Genetics

 

 

ANFS649

Food Biotechnology 

Spring

Adrienne Shearer

ANFS671

Paradigms in Cell Signaling

Spring

Mark Parcells

BINF640

Database for Bioinformatics

Spring

Huseyin Kuyuk

BINF644

Bioinformatics

Fall/Spring

Cecilia Arighi

BINF690

Programming for Bioinformatics

Fall/Spring

Ryan Moore, Jaysheel Bhavsar

BINF694

Systems Biology I

Spring

Shawn Polson, Cecilia Arighi

CHEG420

Biochemical Engineering

Spring

Terry Papoutsakis

CHEG621

Metabolic Engineering

Fall

Aditya Kunjapur

CHEM641

Biochemistry 

Fall

various faculty

CIEG644

Microbiology of Engineered Systems

*

faculty

MAST616

Methods in Molecular Biology

Spring*

Jen Biddle

MMSC650

Medical Biochemistry

Spring

Sam Biswas

MMSC690

Clinical & Molecular Cell Biology

Fall

Sam Biswas