Microbiology: Degree Requirements
Our interdisciplinary program capitalizes on existing strengths of University of Delaware faculty from many departments across five colleges:
- College of Agriculture and Natural Resources
- College of Earth, Ocean, and Environment
- College of Engineering
- College of Arts and Sciences
- College of Health Sciences
As a student in the program, you may be advised by any of the faculty affiliated with the program. Upon completing the program, your degree will be granted by the college in which your adviser is housed.
The Microbiology Graduate Program offers two degree options:
A Ph.D. with dissertation (42 credits)
A Master of Science with thesis (30 credits)
Both degrees offer four areas of study:
- Environmental Microbiology: This track includes geomicrobiology, microbial ecology of non-host environments, biogeochemistry and viral ecology.
- Host-Microbe Interactions: This track includes host-associated microbiomes, microbial ecology of host-associated environments, pathogenesis, immunology and virology.
- Applied Microbiology: This track includes bioremediation, fermentation, food and agricultural microbiology, industrial microbiology and synthetic biology.
- Microbial Physiology and Genetics: This track includes systems biology, microbial biochemistry, metabolism and gene regulation.
To be accepted into our MS program, students must have a faculty member identified and agreed upon as a sponsor.
We expect M.S. graduates to
Critically analyze the primary literature
Accurately carry out complex experimental designs based on the primary literature
Analyze quantitative and bioinformatic microbiology data
Compellingly present results of experiments in both oral and written formats
Course requirements summary:
MS students are required to take 8 credits from the core curriculum (7 course credits plus 1 seminar credit), 12 credits chosen from the electives relevant to their concentrations, 4 research credits and 6 thesis credits, for a total of 30 credits.
MS in Microbiology |
No. of credits |
Core courses |
7 |
Seminar |
1 |
Elective courses |
12 |
Research credits |
4 |
Thesis credits |
6 |
Total credits |
30 |
In addition to the skills of an M.S., we expect Ph.D. graduates to
Identify knowledge gaps in their track/concentration
Design and implement research programs that creatively address these knowledge gaps
Develop and demonstrate teaching skills (these include, but are not limited to, a TA-ship in a classroom or laboratory setting; designing and developing teaching aids like audiovisual packages for classroom use; designing and implementing one or more lab experiments for a course; guest lecturing)
PhD students are required to take 12 credits from the core curriculum (9 course credits plus 3 seminar credits), 15 credits chosen from the electives relevant to their concentrations, and 9 dissertation credits, for a total of 42 credits. PhD students will also be expected to do rotations through three labs within their first 6 months in the program, in order to (a) hone skills for their Ph.D. project and (b) get a more well-rounded perspective of microbiology research.
PhD in Microbiology |
No. of credits |
Core courses |
9 |
Seminar |
3 |
Elective courses |
15 |
Research credits |
6 |
Dissertation credits |
9 |
Total credits |
42 |
Core Courses
- Microbial Physiology and Diversity (MAST625; 3 credits): Microbial growth and composition, cell architecture and structures, energy metabolism, diversity in energy and assimilatory metabolism.
- Microbial Genetics and Genomics (MAST626; 3 credits): Central dogma, genetic techniques, gene regulation, genome structure and function, -omics, focus on archaea, bacteria and viruses.
- Current Topics in Microbiology: Seminar (MCRO811, 1X for M.S. [1 credit], 3X for Ph.D. [3 credits]): Exposure to the breadth of research including microbiology from external and internal speakers; required presentation on the student’s research project will foster oral communication and professional development.
- Microbiology Journal Club (BISC850, 1X for M.S. [1 credit], 3X for Ph.D. [3 credits]): Develop critical literature analysis skills and discussion practices; requirement to present a paper will foster oral communication skills.
Laboratory Rotation (Ph.D. only): Acquisition of laboratory skills and selection of advisor through three laboratory rotations.
Elective Courses:
A range of electives is available based on the teaching activities of Microbiology program faculty. To be included as an elective in the Microbiology graduate program, a course must be 600-level or higher and be approved after a review of the syllabus by the Program Director and Faculty Steering Committee. An asterisk* indicates a course is not taught every year. Faculty regularly develop new courses and so students may inquire about substitutions and additions to this list.
Course Number |
Course Title |
Semester |
Professor |
Environmental Microbiology |
|
|
|
BINF640 |
Database for Bioinformatics |
Spring |
Huseyin Kuyuk |
BINF644 |
Bioinformatics |
Fall/Spring |
Cecilia Arighi |
BINF690 |
Programming for Bioinformatics |
Fall/Spring |
Ryan Moore, Jaysheel Bhavsar |
BINF694 |
Systems Biology I |
Spring |
Shawn Polson, Cecilia Arighi |
CIEG644 |
Microbiology of Engineered Systems |
* |
faculty |
GEOL645/MAST645 |
Geomicrobiology |
Fall* |
Clara Chan |
MAST616 |
Methods in Molecular Biology |
Spring* |
Jen Biddle |
MAST618 |
Microbial Ecology |
Spring |
Jen Biddle |
MAST634 |
Marine Molecular Science |
Fall |
Jen Biddle |
PLSC619 |
Soil Microbiology |
Spring |
Jeff Fuhrmann |
Host-microbe Interactions |
|
|
|
ANFS655 |
Gut Microbiome |
Spring |
Alexander Yitbarek |
ANFS635 |
Animal Virology |
Fall |
Mark Parcells |
ANFS671 |
Paradigms in Cell Signaling |
Spring* |
Mark Parcells |
BINF640 |
Database for Bioinformatics |
Spring |
Huseyin Kuyuk |
BINF644 |
Bioinformatics |
Fall/Spring |
Cecilia Arighi |
BINF690 |
Programming for Bioinformatics |
Fall/Spring |
Ryan Moore, Jaysheel Bhavsar |
BINF694 |
Systems Biology I |
Spring |
Shawn Polson, Cecilia Arighi |
MAST616 |
Methods in Molecular Biology |
Spring* |
Jen Biddle |
MAST634 |
Marine Molecular Science |
Fall |
Jen Biddle |
MMSC650 |
Medical Biochemistry |
Spring |
Subhasis (Sam) Biswas |
MMSC690 |
Clinical & Molecular Cell Biology |
Fall |
Sam Biswas |
MMSC638 |
Diagnostic Medical Mycology and Bacteriology |
Fall |
Kimberly Walker |
PLSC619 |
Soil Microbiology |
Spring |
Jeff Fuhrmann |
PLSC611 |
Molecular Plant Pathology |
Fall |
Nicole Donofrio |
Applied Microbiology |
|
|
|
ANFS649 |
Food Biotechnology |
Spring |
Adrienne Shearer |
ANFS636 |
Immunology of Domestic Animals |
Spring/Fall |
Mark Parcells/Alexander Bekele-Yitbarek |
ANFS639 |
Food Microbiology |
Fall |
Kali Kniel |
BINF640 |
Database for Bioinformatics |
Spring |
Huseyin Kuyuk |
BINF644 |
Bioinformatics |
Fall/Spring |
Cecilia Arighi |
BINF690 |
Programming for Bioinformatics |
Fall/Spring |
Ryan Moore, Jaysheel Bhavsar |
BINF694 |
Systems Biology I |
Spring |
Shawn Polson, Cecilia Arighi |
CHEG420 |
Biochemical Engineering |
Spring |
Terry Papoutsakis |
CHEG621 |
Metabolic Engineering |
Spring |
Aditya Kunjapur |
CHEM641 |
Biochemistry |
Fall |
various faculty |
CIEG644 |
Microbiology of Engineered Systems |
* |
faculty |
MAST616 |
Methods in Molecular Biology |
Spring* |
Julie Maresca/Jen Biddle |
MMSC638 |
Diagnostic Medical Mycology and Bacteriology |
Fall |
Kimberly Walker |
PLSC611 |
Molecular Plant Pathology |
Fall |
Nicole Donofrio |
Microbial Physiology and Genetics |
|
|
|
ANFS649 |
Food Biotechnology |
Spring |
Adrienne Shearer |
ANFS671 |
Paradigms in Cell Signaling |
Spring |
Mark Parcells |
BINF640 |
Database for Bioinformatics |
Spring |
Huseyin Kuyuk |
BINF644 |
Bioinformatics |
Fall/Spring |
Cecilia Arighi |
BINF690 |
Programming for Bioinformatics |
Fall/Spring |
Ryan Moore, Jaysheel Bhavsar |
BINF694 |
Systems Biology I |
Spring |
Shawn Polson, Cecilia Arighi |
CHEG420 |
Biochemical Engineering |
Spring |
Terry Papoutsakis |
CHEG621 |
Metabolic Engineering |
Fall |
Aditya Kunjapur |
CHEM641 |
Biochemistry |
Fall |
various faculty |
CIEG644 |
Microbiology of Engineered Systems |
* |
faculty |
MAST616 |
Methods in Molecular Biology |
Spring* |
Jen Biddle |
MMSC650 |
Medical Biochemistry |
Spring |
Sam Biswas |
MMSC690 |
Clinical & Molecular Cell Biology |
Fall |
Sam Biswas |