Evolution & Genomics

RN Platt, MW Vandewege, C Kern, CJ Schmidt, FG Hoffmann, DA Ray (2014) Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats. Molecular Biology and Evolution doi: 10.1093/molbev/msu112.

John A. St. John and 48 others (2012) Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology 13:415.

C.J. Schmidt, M.E. Persia, E. Feierstein, B. Kingham W.W. Saylor (2009) Comparison of a Modern Broiler Line and a Heritage Line Unselected Since the 1950s. Poultry Science 88, 2610-2619.


Bioinformatics

Lakshmi Pillai, Philippe Chouvarine, Catalina O Tudor, Carl J Schmidt, K Vijay-Shanker, Fiona M McCarthy (2012) Developing a biocuration workflow for AgBase a non-model organism database. Database (Oxford) 2012:bas038.

Tudor CO, Schmidt CJ, Vijay-Shanker K.(2010) eGIFT: mining gene information from the literature. BMC Bioinformatics. 2010 Aug 9;11:418

Schmidt, C. J. , Romanov, M., Ryder, O., Magrini, V., Hickenbotham, M., Glasscock, J., McGrath, S., Mardis, E., Stein, L.D.(2008) Gallus GBrowse:a unified genomic database for the chicken Nucleic Acids Research. 36, D719-D723.

S. Khan, G. Situ, K. Decker, and C.J. Schmidt. (2003) GO-Figure: a tool to visualize automated Gene Ontology annotation. Bioinformatics. 12, 2484-2485.

H. Kim, C.J. Schmidt, K.S. Decker and M.G. Emara. (2003) A double-screening method to identify reliable candidate non-synonymous SNPs from chicken EST data. Animal Genetics. 34, 249-254

S. Khan, R. Makkena, F. McGeary, K. Decker, W. Gillis, and C.J. Schmidt. (2003)A Multi-Agent System for the Quantitive Simulation of Biological Networks. In Proceedings of the International Conference on Autonomous Agents and Multi-Agent Systems, 2003.

S. Khan, K. Decker, W. Gillis, and C.J. Schmidt.(2003)  A Multi-Agent System-driven AI Planning Approach to Biological Pathway Discovery. In Proceedings of the International Conference on Automated Planning, 2003.

Decker, K., Khan, S., Schmidt, C.J. Situ, G., Makkena, R.,  Michaud, D., (2002) Biomas: A multi-agent system for genomic annotation.  International Journal of Cooperative Information Systems. 11, 265-292.

Decker, K.,  Khan, S,. Schmidt, C.J., Michaud. D.,(2001) Extending a Multi-Agent System for Genomic Annotation. Workshop on Cooperative Information Agents, Modena, Italy. LNAI 2182, Springer-Verlag

Decker, K., Zheng, X. and Schmidt C.J. SPT: A Multi-Agent System for Automated Genomic Annotation (2001) Automated Agents. 5, 433-440.

Virology

Anobile, J., Arumugaswami, V., Downs, D., Czymmek, K., Parcells, M., and Schmidt, C.J. (2006) Nuclear Localization and Dynamic Properties of the MarekÕs Disease Virus Oncogene Products Meq and Meq-vIL8.Journal of Virology. 80, 1160-1166.

Karaca, G., Anobile, J., Downs, D., Burnside, J., and Schmidt, C.J. (2004) Herpesvirus of Turkeys: Microarray Analysis of Host Gene Responses to Infection. Virology. 318, 102-111.

Abdel Aouacheria, Michelle Banyai, Dominique Rigal, Carl J. Schmidt and Germain Gillet (2003) Characterization of vNr-13, the first alphaherpesvirus gene of the bcl-2 family, Virology, 316,  256-266  

O’Donnell, L.A., Clemmer, J.A., Czymmek, K., and Schmidt, C.J. (2002) Marek’s Disease Virus VP22: Subcellular Localization and Characterization of Carboxyl Terminal Deletion Mutations. Virology 292, 235-240

Kingham, B.F., Zelnik, V., Kopaek, J., Majeriak, V., Ney, E., and Schmidt, C.J. (2001) Genome Sequence of Herpesvirus of Turkeys: Comparative Analysis with Marek's Disease Viruses.  J. Gen Virol.  82, 1123-1135.


Signal Transduction

Drmanac, S., Kita, D., Labat, I., Hauser, B., Schmidt, C., Burczak, J.D. and Drmanac, R.  (1998) Accurate sequencing by hybridization for DNA diagnostics and individual genomics.  Nature Biotechnology 16, 54-58. 

Rasio, D., Murakumo, Y., Robbins, D., Roth, T., Silver, A., Negrini, M., Schmidt, C.J., Burczak, J., Rishel, R., and Croce, C.M. (1997) Characterization of the Human Homologue of RAD54.  Cancer Research  57, 1378-1383.

Mende, U, Schmidt, C.J., Yi, F., Spring, D.J. and Neer, E.J. (1995) The G protein g Subunit: Requirements for Dimerization with b Subunits. J. Biol. Chem. 270, 15892-15898.

Neer, E.J., Schmidt, C.J. Nambudripad, R. and Smith, T.F. (1994) The ancient regulatory-protein family of WD-repeat proteins.  Nature 371, 297-300.

Neer, E.J., Denker, B.M., Thomas, T. C., and Schmidt, C.J. (1994) Analysis of G-Protein a and bg Subunits by in Vitro Translation.  Methods in Enzymology  237, 226-239.

Schmidt, C.J. Zubiaur, M., Valenzuela, D., Neer, E.J. and Drager, U.C. (1994) Go, A Guanine Nucleotide Binding Protein, is Expressed During Neurite Extension in the Embryonic Mouse.  J. Neuroscience Research.  38: 182-187.

Neer, E.J. , Schmidt, C.J. and Smith, T. (1993) LIS is more  Nature (Genetics)  5, 3-4

Schmidt, C.J. and Sladek, T.E. (1993) A Rat Homolog of the Drosophila Enhancer of split (groucho) Locus Lacking WD-40 Repeats.  J. Biol. Chem 268: 25681-25686.

Thomas, T.C., Schmidt, C.J. and Neer, E.J. (1993) G Protein ao Subunit: Mutation of Conserved Cysteines Identifies a Subunit Contact Surface and Alters GDP Affinity.  Proc. Natl. Acad. Sci. USA 90: 10295-10299.

Schmidt, C.J. , Thomas, T.,  Levine, M.A., and Neer, E.J. (1992) Specificity of G Protein Beta and Gamma Subunit Interactions.  J. Biol. Chem. 267: 13807-13811.

Denker, B.D., Schmidt, C.J. and Neer, E.J.  (1992) Promotion of the GTP-Liganded State of the Go-Alpha Protein by Deletion of the Carboxy Terminus.  J. Biol. Chem.  267: 9998-10002.

Denker, B.D., Neer, E.J. and Schmidt, C.J. (1992) Mutagenesis of the amino terminus of the a subunit of the G Protein Go.  J. Biol. Chem. 267: 6272-6277.

Schmidt, C.J. and Neer, E.J. (1991) In Vitro  synthesis of G protein bg dimers.  J. Biol. Chem. 266: 4538-4544.

Garen-Fazio, S., Neer, E.J. and Schmidt, C.J. (1991) Identification of a retinal protein in Drosophila with an antibody to the alpha subunit of bovine brain Go protein.  J. Comp. Neurology 309: 17-26.

Schmidt, C.J., Garen-Fazio, S., Chow, Y.K. and Neer, E.J. (1989) Neuronal expression of a newly identified Drosophila  G-Protein alpha subunit.  Cell Regulation 1: 125-134.

Myosin

Jung, G., Schmidt, C.J. and Hammer, J.A. (1989) Myosin I heavy chain genes of Acanthamoeba: Cloning of a second gene and evidence for existence of a third gene.  Gene 82: 269-280.


Metallothionein

Schmidt, C.J., Jubier, M.F. and Hamer, D.H. (1986) Cell specificity and effect of ras on human metallothionein gene expression.  Proc.  Natl. Acad. Sci. USA. 83: 3346-3350.

Carter, A.D., Felber, B.K., Walling, M.J., Jubier, M.F., Schmidt, C.J. and Hamer, D.H.  (1985) Duplicated heavy metal control sequences of the mouse metallothionein I gene. Proc. Natl. Acad. Sci. USA. 81: 7392-7396.

Schmidt, C.J., Hamer, D.H. and McBride, O. W. (1984) Chromosomal location of human metallothionein genes: Implication for Menkes' Disease.  Science 224:  1104-1106.

Schmidt, C.J. and Hamer, D.H. (1983) Cloning and sequence analysis of two monkey metallothionein cDNAs.  Gene 24: 137-146.

Alcohol Dehydrogenase

Ross, J.B.A., Schmidt, C.J., and Brand, L.  (1981) Time resolved fluorescence of two tryptophans in horse liver alcohol dehydrogenase. Biochemistry  20: 4369-4377.


Patents

Schmidt, Carl J., Tobin, Frank, and Wilkinson, Francis E.  (1998) Method of Diagnosing and Monitoring Prostate Cancer. Patent Number:  5,747,264.

Schmidt, Carl J., Tobin, Frank, and Wilkinson, Francis E. (1999) Method of Diagnosing and Monitoring Cancer. Patent Number: 5,942,402 .

Schmidt; Carl J and  Wang; Xin-Min. (2003) Method of detecting and treating cancer: endometrial steroid binding protein II  Patent Number: 6,667,291.